Yes, some IDvet tests allow for DIVA applications (Differentiation Infected and Vaccincated animals).
The IBRgE and Aujeszky gE tests detect naturally-infected animals in a vaccinated population, provided that animals are vaccinated with gE-deleted vaccines.
For avian influenza, if vaccination is performed using a homologous hemagglutinin to the highly pathogenic field strain (H5), but a heterologous neuraminidase subtype, serologic surveillance can be performed by testing for antibodies against the homologous N subtype (N1) as evidence of natural infection.